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Cloud-based microbe analysis pipelines on National Cancer Institute (NCI) cloud resources

Hsinyi Tsang (National Institutes of Health)

License: CC BY

Abstract: National Cancer Institute (NCI) Cloud Resources1,2, formerly the NCI Cancer Genomics Cloud Pilots, were developed with the goal of democratizing access to cancer genomic data and facilitating analysis. As a Software-as-a-Service built on commercial cloud architectures, these resources offer the flexibility for users to package their own tools in the form of Docker containers, and tools can be joined to form complex workflows described by Common Workflow Language (CWL) or Workflow Description Language (WDL). In a user-friendly graphical interface, computation and data are encapsulated in a secured, access-controlled environment that also allows for sharing with collaborators. Here we present analysis workflows for microbe (microbiome, metagenomics, pathogen) analysis with visualization tools.

Published on 23 Oct. 2017