Localized Region Contrast for Enhancing Self-Supervised Learning in Medical Image Segmentation

Authors: Xiangyi Yan, Junayed Naushad, Chenyu You, Hao Tang, Shanlin Sun, Kun Han, Haoyu Ma, James Duncan, Xiaohui Xie

License: CC BY 4.0

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In recent years, self-supervised learning has demonstrated the potential to learn effective visual representations from unlabeled images, which has sparked an increased interest in applying self-supervised learning to the medical domain, where obtaining labeled images can be challenging. However, most existing self-supervised learning approaches are modeled as image level discriminative or generative proxy tasks, which may not capture the finer level representations necessary for dense prediction tasks such as multi-organ segmentation. To address this issue, Xiangyi Yan and colleagues propose a novel contrastive learning framework that integrates Localized Region Contrast (LRC) into existing self-supervised pre-training methods for medical image segmentation. The proposed approach involves identifying Super-pixels by Felzenszwalb's algorithm and performing local contrastive learning using a novel contrastive sampling loss. The authors conduct extensive experiments on three multi-organ segmentation datasets and demonstrate that integrating LRC into an existing self-supervised method in a limited annotation setting significantly improves segmentation performance. Moreover, they show that LRC can also be applied to fully supervised pre-training methods to further boost performance. The main contributions of this work include proposing a standalone localized contrastive learning module that can be integrated into most existing pre-training strategies to boost multi-organ segmentation performance by learning localized feature representations. They also introduce a novel localized contrastive sampling loss for dense self-supervised pre-training on local regions. Overall, the proposed framework offers promising results and could potentially improve medical image segmentation tasks where labeled data is scarce.
AI-generated keywords: Self-supervised Learning

AI-generated Key Points

  • Self-supervised learning can learn effective visual representations from unlabeled images
  • Self-supervised learning is being applied to the medical domain due to challenges in obtaining labeled images
  • Existing self-supervised learning approaches may not capture finer level representations necessary for dense prediction tasks such as multi-organ segmentation
  • Xiangyi Yan and colleagues propose a novel contrastive learning framework that integrates Localized Region Contrast (LRC) into existing self-supervised pre-training methods for medical image segmentation
  • The proposed approach involves identifying Super-pixels by Felzenszwalb's algorithm and performing local contrastive learning using a novel contrastive sampling loss
  • Extensive experiments on three multi-organ segmentation datasets demonstrate that integrating LRC into an existing self-supervised method significantly improves segmentation performance, even in limited annotation settings
  • LRC can also be applied to fully supervised pre-training methods to further boost performance
  • The proposed framework offers promising results and could potentially improve medical image segmentation tasks where labeled data is scarce.
  • Main contributions of this work include proposing a standalone localized contrastive learning module that can be integrated into most existing pre-training strategies to boost multi-organ segmentation performance by learning localized feature representations and introducing a novel localized contrastive sampling loss for dense self-supervised pre-training on local regions.
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Abstract: Recent advancements in self-supervised learning have demonstrated that effective visual representations can be learned from unlabeled images. This has led to increased interest in applying self-supervised learning to the medical domain, where unlabeled images are abundant and labeled images are difficult to obtain. However, most self-supervised learning approaches are modeled as image level discriminative or generative proxy tasks, which may not capture the finer level representations necessary for dense prediction tasks like multi-organ segmentation. In this paper, we propose a novel contrastive learning framework that integrates Localized Region Contrast (LRC) to enhance existing self-supervised pre-training methods for medical image segmentation. Our approach involves identifying Super-pixels by Felzenszwalb's algorithm and performing local contrastive learning using a novel contrastive sampling loss. Through extensive experiments on three multi-organ segmentation datasets, we demonstrate that integrating LRC to an existing self-supervised method in a limited annotation setting significantly improves segmentation performance. Moreover, we show that LRC can also be applied to fully-supervised pre-training methods to further boost performance.

Submitted to arXiv on 06 Apr. 2023

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